Publications

  • Islam, M.T., Zhou, Z., Zou, J., Kapp, D., Liao, J. and and Xing, L.,“ Revealing hidden patterns in deep neural network feature space continuum via manifold learning”, 2023, in press, Nature Communications.
  • Islam, M.T. and Xing, L.,“Cartography of genomic interactions enables deep analysis of single-cell expression data”, 2023, Nature Communications, 14(1), p.679.
  • Islam, M.T. and Xing, L.,“Leveraging cell-cell interactions for high-performance spatial and temporal cellular mappings from gene expression data”, 2023, Patterns, Cell Press, p.100840.
  • Islam, M.T., Wang, J., Ren, H., Li, X., Khuzani, M., Yu, L., Shen, L., Zhao, W., and Xing, L.,“ Leveraging data-driven self-consistency for high-fidelity gene expression recovery”, 2022, Nature Communications, 13(1), pp.7142.
  • Islam, M.T. and Xing, L.,“A data-driven dimensionality-reduction algorithm for the exploration of patterns in biomedical data”, 2021, Nature Biomedical Engineering, 5(6), pp.624-635.
  • Liu, J., Islam, M.T., Sang, S., Qiu, L., and Xing, L., “Biology-aware mutation-based deep learning for outcome prediction of cancer immunotherapy with immune checkpoint inhibitors”, 2023, npj Precision Oncology, 7 (1), pp.117.
  • Sang, S., Zhou, Y., Islam, M.T. and Xing, L.,“Small-object sensitive segmentation using across feature map attention”, 2023, IEEE Transactions on Pattern Analysis and Machine Intelligence, 45 (5), pp.6289-6306.